STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV28418.1Mn-containing catalase. (423 aa)    
Predicted Functional Partners:
SFV28413.1
Threonine dehydrogenase; Manually curated.
 
    0.795
SFV34104.1
Ferritin-like metal-binding protein YciE.
 
   
0.777
SFV29241.1
Ferritin-like metal-binding protein YciE.
 
   
0.771
SFV38925.1
Hypothetical protein.
 
  
 0.696
SFV32220.1
Low affinity Fe/Cu permease.
  
    0.623
SFV34098.1
Low affinity Fe/Cu permease.
  
    0.623
SFV27328.1
Superoxide dismutase, Fe-Mn family; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.601
SFV37100.1
Short chain dehydrogenase.
  
     0.555
SFV32028.1
Bifunctional non-homologous end joining protein LigD.
 
     0.526
SFV32032.1
Bifunctional non-homologous end joining protein LigD.
 
     0.518
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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