STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV28455.1Diguanylate cyclase (GGDEF) domain-containing protein. (721 aa)    
Predicted Functional Partners:
SFV28443.1
Response regulator receiver domain-containing protein.
 
 0.972
SFV28447.1
Signal transduction histidine kinase.
  
 
 0.950
SFV32649.1
Signal transduction histidine kinase.
  
 0.950
SFV30069.1
PAS domain S-box-containing protein.
 
 0.949
SFV38049.1
Signal transduction histidine kinase.
 0.937
SFV35050.1
PAS domain S-box-containing protein.
 
 0.929
SFV29087.1
Cell cycle control histidine kinase CckA.
  
 0.926
SFV36782.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
0.910
SFV38921.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
 0.904
SFV34286.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.794
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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