node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFV26229.1 | rplQ | SAMN04488557_0384 | SAMN04488557_1599 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L17P. | 0.993 |
SFV26229.1 | rplT | SAMN04488557_0384 | SAMN04488557_0256 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.981 |
SFV26229.1 | rplU | SAMN04488557_0384 | SAMN04488557_0114 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.990 |
SFV26229.1 | rpmA | SAMN04488557_0384 | SAMN04488557_0113 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.993 |
SFV26229.1 | rpmI | SAMN04488557_0384 | SAMN04488557_0257 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. | 0.971 |
SFV26229.1 | rpmJ | SAMN04488557_0384 | SAMN04488557_0598 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | LSU ribosomal protein L36P; Manually curated; Belongs to the bacterial ribosomal protein bL36 family. | 0.984 |
SFV26229.1 | rpoA | SAMN04488557_0384 | SAMN04488557_1600 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
SFV26229.1 | rpsD | SAMN04488557_0384 | SAMN04488557_1176 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
SFV26229.1 | rpsK | SAMN04488557_0384 | SAMN04488557_1601 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
SFV26229.1 | rpsL | SAMN04488557_0384 | SAMN04488557_1630 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |
rplQ | SFV26229.1 | SAMN04488557_1599 | SAMN04488557_0384 | LSU ribosomal protein L17P. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.993 |
rplQ | rplT | SAMN04488557_1599 | SAMN04488557_0256 | LSU ribosomal protein L17P. | LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.999 |
rplQ | rplU | SAMN04488557_1599 | SAMN04488557_0114 | LSU ribosomal protein L17P. | LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.999 |
rplQ | rpmA | SAMN04488557_1599 | SAMN04488557_0113 | LSU ribosomal protein L17P. | LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family. | 0.999 |
rplQ | rpmI | SAMN04488557_1599 | SAMN04488557_0257 | LSU ribosomal protein L17P. | LSU ribosomal protein L35P; Belongs to the bacterial ribosomal protein bL35 family. | 0.997 |
rplQ | rpmJ | SAMN04488557_1599 | SAMN04488557_0598 | LSU ribosomal protein L17P. | LSU ribosomal protein L36P; Manually curated; Belongs to the bacterial ribosomal protein bL36 family. | 0.999 |
rplQ | rpoA | SAMN04488557_1599 | SAMN04488557_1600 | LSU ribosomal protein L17P. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
rplQ | rpsD | SAMN04488557_1599 | SAMN04488557_1176 | LSU ribosomal protein L17P. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.999 |
rplQ | rpsK | SAMN04488557_1599 | SAMN04488557_1601 | LSU ribosomal protein L17P. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.999 |
rplQ | rpsL | SAMN04488557_1599 | SAMN04488557_1630 | LSU ribosomal protein L17P. | SSU ribosomal protein S12P; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. | 0.999 |