STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV33454.1General secretion pathway protein E. (562 aa)    
Predicted Functional Partners:
SFV33456.1
General secretion pathway protein F.
 
 
 0.962
SFV29614.1
Type II secretion system protein F (GspF).
 
 
 0.917
SFV36994.1
Type II secretion system protein F (GspF).
 
 
 0.917
SFV37368.1
General secretion pathway protein F.
 
 
 0.917
SFV36982.1
Fimbrial assembly protein (PilN).
 
 
 0.801
SFV33458.1
General secretion pathway protein G.
 
 0.740
SFV33450.1
Type II secretion system protein D (GspD).
 
  
 0.725
SFV33464.1
General secretion pathway protein J.
  
  0.680
SFV33462.1
N-terminal methylation site-containing protein.
  
  0.678
SFV33468.1
General secretion pathway protein L.
 
 
 
 0.631
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.