STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV33513.1AraC-type DNA-binding protein. (300 aa)    
Predicted Functional Partners:
SFV33516.1
2-polyprenyl-6-methoxyphenol hydroxylase.
       0.773
SFV33510.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
 
     0.636
SFV38942.1
Helix-turn-helix domain-containing protein.
  
     0.629
SFV32649.1
Signal transduction histidine kinase.
     
 0.627
SFV34400.1
Transcriptional regulator, AraC family.
  
     0.599
SFV27569.1
Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain.
  
   0.588
SFV33518.1
Glyoxylase, beta-lactamase superfamily II.
       0.553
SFV38792.1
AraC family transcriptional regulator, activator of mtrCDE.
  
     0.422
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.