STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV34424.1Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (334 aa)    
Predicted Functional Partners:
SFV34418.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.949
SFV34421.1
Putative spermidine/putrescine transport system permease protein.
 
  0.909
SFV34428.1
Spermidine/putrescine transport system substrate-binding protein.
  
 
  0.830
SFV32811.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.784
SFV25808.1
Spermidine/putrescine transport system permease protein.
 
  0.738
SFV38915.1
Putrescine transport system permease protein.
  
  0.736
SFV34470.1
Spermidine/putrescine transport system permease protein.
  
 
  0.728
SFV25807.1
Spermidine/putrescine transport system permease protein.
  
 
  0.692
SFV38914.1
Putrescine transport system permease protein.
 
 
  0.673
SFV29522.1
Carbohydrate ABC transporter membrane protein 2, CUT1 family.
 
  
 0.662
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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