Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFV34736.1 | SFV34740.1 | SAMN04488557_2411 | SAMN04488557_2412 | Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. | Hypothetical protein. | 0.736 |
SFV34736.1 | der | SAMN04488557_2411 | SAMN04488557_2410 | Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.790 |
SFV34740.1 | SFV34736.1 | SAMN04488557_2412 | SAMN04488557_2411 | Hypothetical protein. | Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. | 0.736 |
SFV34740.1 | der | SAMN04488557_2412 | SAMN04488557_2410 | Hypothetical protein. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.686 |
SFV35540.1 | cmk | SAMN04488557_2605 | SAMN04488557_0380 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | Cytidylate kinase. | 0.879 |
SFV35540.1 | der | SAMN04488557_2605 | SAMN04488557_2410 | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.897 |
SFV37762.1 | der | SAMN04488557_3326 | SAMN04488557_2410 | GTP-binding protein. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.834 |
SFV37762.1 | rplA | SAMN04488557_3326 | SAMN04488557_1635 | GTP-binding protein. | Large subunit ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. | 0.803 |
cmk | SFV35540.1 | SAMN04488557_0380 | SAMN04488557_2605 | Cytidylate kinase. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.879 |
cmk | der | SAMN04488557_0380 | SAMN04488557_2410 | Cytidylate kinase. | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.976 |
cmk | ffh | SAMN04488557_0380 | SAMN04488557_3306 | Cytidylate kinase. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the i [...] | 0.782 |
cmk | gpsA | SAMN04488557_0380 | SAMN04488557_3494 | Cytidylate kinase. | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.491 |
der | SFV34736.1 | SAMN04488557_2410 | SAMN04488557_2411 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat. | 0.790 |
der | SFV34740.1 | SAMN04488557_2410 | SAMN04488557_2412 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Hypothetical protein. | 0.686 |
der | SFV35540.1 | SAMN04488557_2410 | SAMN04488557_2605 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 23S rRNA pseudouridine2605 synthase; Belongs to the pseudouridine synthase RsuA family. | 0.897 |
der | SFV37762.1 | SAMN04488557_2410 | SAMN04488557_3326 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | GTP-binding protein. | 0.834 |
der | cmk | SAMN04488557_2410 | SAMN04488557_0380 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.976 |
der | dnaG | SAMN04488557_2410 | SAMN04488557_4076 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.964 |
der | ffh | SAMN04488557_2410 | SAMN04488557_3306 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Signal recognition particle subunit FFH/SRP54 (srp54); Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Interaction with FtsY leads to the transfer of the RNC complex to the Sec translocase for insertion into the membrane, the hydrolysis of GTP by both Ffh and FtsY, and the dissociation of the SRP-FtsY complex into the i [...] | 0.705 |
der | gpsA | SAMN04488557_2410 | SAMN04488557_3494 | GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Glycerol-3-phosphate dehydrogenase (NAD(P)+); Belongs to the NAD-dependent glycerol-3-phosphate dehydrogenase family. | 0.960 |
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