Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFV26104.1 | SFV26499.1 | SAMN04488557_0327 | SAMN04488557_0498 | Outer membrane protein OmpA. | Tetratricopeptide repeat-containing protein. | 0.513 |
SFV26104.1 | SFV32649.1 | SAMN04488557_0327 | SAMN04488557_1675 | Outer membrane protein OmpA. | Signal transduction histidine kinase. | 0.478 |
SFV26104.1 | SFV34899.1 | SAMN04488557_0327 | SAMN04488557_2450 | Outer membrane protein OmpA. | D-alanyl-D-alanine carboxypeptidase. | 0.431 |
SFV26104.1 | SFV39125.1 | SAMN04488557_0327 | SAMN04488557_4151 | Outer membrane protein OmpA. | Protein of unknown function. | 0.496 |
SFV26499.1 | SFV26104.1 | SAMN04488557_0498 | SAMN04488557_0327 | Tetratricopeptide repeat-containing protein. | Outer membrane protein OmpA. | 0.513 |
SFV26499.1 | SFV32649.1 | SAMN04488557_0498 | SAMN04488557_1675 | Tetratricopeptide repeat-containing protein. | Signal transduction histidine kinase. | 0.969 |
SFV26499.1 | SFV34899.1 | SAMN04488557_0498 | SAMN04488557_2450 | Tetratricopeptide repeat-containing protein. | D-alanyl-D-alanine carboxypeptidase. | 0.475 |
SFV26499.1 | SFV39125.1 | SAMN04488557_0498 | SAMN04488557_4151 | Tetratricopeptide repeat-containing protein. | Protein of unknown function. | 0.999 |
SFV32649.1 | SFV26104.1 | SAMN04488557_1675 | SAMN04488557_0327 | Signal transduction histidine kinase. | Outer membrane protein OmpA. | 0.478 |
SFV32649.1 | SFV26499.1 | SAMN04488557_1675 | SAMN04488557_0498 | Signal transduction histidine kinase. | Tetratricopeptide repeat-containing protein. | 0.969 |
SFV32649.1 | SFV34899.1 | SAMN04488557_1675 | SAMN04488557_2450 | Signal transduction histidine kinase. | D-alanyl-D-alanine carboxypeptidase. | 0.526 |
SFV34894.1 | SFV34899.1 | SAMN04488557_2449 | SAMN04488557_2450 | Ppx/GppA phosphatase. | D-alanyl-D-alanine carboxypeptidase. | 0.447 |
SFV34894.1 | rlmE | SAMN04488557_2449 | SAMN04488557_2448 | Ppx/GppA phosphatase. | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.840 |
SFV34899.1 | SFV26104.1 | SAMN04488557_2450 | SAMN04488557_0327 | D-alanyl-D-alanine carboxypeptidase. | Outer membrane protein OmpA. | 0.431 |
SFV34899.1 | SFV26499.1 | SAMN04488557_2450 | SAMN04488557_0498 | D-alanyl-D-alanine carboxypeptidase. | Tetratricopeptide repeat-containing protein. | 0.475 |
SFV34899.1 | SFV32649.1 | SAMN04488557_2450 | SAMN04488557_1675 | D-alanyl-D-alanine carboxypeptidase. | Signal transduction histidine kinase. | 0.526 |
SFV34899.1 | SFV34894.1 | SAMN04488557_2450 | SAMN04488557_2449 | D-alanyl-D-alanine carboxypeptidase. | Ppx/GppA phosphatase. | 0.447 |
SFV34899.1 | SFV39125.1 | SAMN04488557_2450 | SAMN04488557_4151 | D-alanyl-D-alanine carboxypeptidase. | Protein of unknown function. | 0.639 |
SFV34899.1 | rlmE | SAMN04488557_2450 | SAMN04488557_2448 | D-alanyl-D-alanine carboxypeptidase. | 23S rRNA Um-2552 2'-O-methyltransferase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. | 0.442 |
SFV39125.1 | SFV26104.1 | SAMN04488557_4151 | SAMN04488557_0327 | Protein of unknown function. | Outer membrane protein OmpA. | 0.496 |
page 1 of 2