STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV37104.1PRC-barrel domain-containing protein. (125 aa)    
Predicted Functional Partners:
SFV36795.1
PRC-barrel domain-containing protein.
  
     0.730
SFV26590.1
DNA-directed RNA polymerase specialized sigma subunit, sigma24 family.
  
    0.677
SFV32656.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
     0.673
SFV32638.1
Response regulator receiver domain-containing protein.
  
    0.670
SFV30100.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
     0.603
SFV26587.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.573
SFV32646.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.550
SFV26604.1
Two-component sensor histidine kinase, contains HisKA and HATPase domains.
  
    0.542
SFV34520.1
Response regulator receiver domain-containing protein.
  
     0.523
SFV35055.1
Response regulator receiver domain-containing protein.
  
    0.520
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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