STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV38164.1DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain. (472 aa)    
Predicted Functional Partners:
SFV33371.1
Natural product biosynthesis luciferase-like monooxygenase domain-containing protein.
   
 
 0.744
SFV37669.1
Pyridoxine kinase.
 
  
 0.577
SFV33373.1
Acyl transferase domain-containing protein.
     
 0.542
SFV38165.1
ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family.
    
  0.525
SFV36922.1
Para-aminobenzoate synthetase / 4-amino-4-deoxychorismate lyase.
  
 0.521
SFV38163.1
Reactive intermediate/imine deaminase.
  
    0.502
SFV38198.1
Indolepyruvate decarboxylase.
   
 0.476
SFV38161.1
NitT/TauT family transport system ATP-binding protein.
       0.463
SFV38162.1
NitT/TauT family transport system permease protein.
       0.463
SFV38158.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
       0.458
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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