Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFV27694.1 | SFV28979.1 | SAMN04488557_0824 | SAMN04488557_1140 | Translation elongation factor 2 (EF-2/EF-G). | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.783 |
SFV27694.1 | SFV28983.1 | SAMN04488557_0824 | SAMN04488557_1141 | Translation elongation factor 2 (EF-2/EF-G). | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.783 |
SFV27694.1 | SFV37296.1 | SAMN04488557_0824 | SAMN04488557_3091 | Translation elongation factor 2 (EF-2/EF-G). | ATP-dependent helicase HrpB. | 0.833 |
SFV27694.1 | SFV38007.1 | SAMN04488557_0824 | SAMN04488557_3449 | Translation elongation factor 2 (EF-2/EF-G). | Hypothetical protein; Manually curated. | 0.998 |
SFV27694.1 | SFV38165.1 | SAMN04488557_0824 | SAMN04488557_3568 | Translation elongation factor 2 (EF-2/EF-G). | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.904 |
SFV27694.1 | pnp | SAMN04488557_0824 | SAMN04488557_3443 | Translation elongation factor 2 (EF-2/EF-G). | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.767 |
SFV27694.1 | rplC | SAMN04488557_0824 | SAMN04488557_1625 | Translation elongation factor 2 (EF-2/EF-G). | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.982 |
SFV28870.1 | SFV28979.1 | SAMN04488557_1114 | SAMN04488557_1140 | MTH538 TIR-like domain. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.783 |
SFV28870.1 | SFV28983.1 | SAMN04488557_1114 | SAMN04488557_1141 | MTH538 TIR-like domain. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.783 |
SFV28870.1 | SFV37296.1 | SAMN04488557_1114 | SAMN04488557_3091 | MTH538 TIR-like domain. | ATP-dependent helicase HrpB. | 0.833 |
SFV28870.1 | SFV38007.1 | SAMN04488557_1114 | SAMN04488557_3449 | MTH538 TIR-like domain. | Hypothetical protein; Manually curated. | 0.998 |
SFV28870.1 | SFV38165.1 | SAMN04488557_1114 | SAMN04488557_3568 | MTH538 TIR-like domain. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.904 |
SFV28870.1 | pnp | SAMN04488557_1114 | SAMN04488557_3443 | MTH538 TIR-like domain. | Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.767 |
SFV28870.1 | rplC | SAMN04488557_1114 | SAMN04488557_1625 | MTH538 TIR-like domain. | LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.975 |
SFV28979.1 | SFV27694.1 | SAMN04488557_1140 | SAMN04488557_0824 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Translation elongation factor 2 (EF-2/EF-G). | 0.783 |
SFV28979.1 | SFV28870.1 | SAMN04488557_1140 | SAMN04488557_1114 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | MTH538 TIR-like domain. | 0.783 |
SFV28979.1 | SFV28983.1 | SAMN04488557_1140 | SAMN04488557_1141 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.578 |
SFV28979.1 | SFV37296.1 | SAMN04488557_1140 | SAMN04488557_3091 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent helicase HrpB. | 0.885 |
SFV28979.1 | SFV38007.1 | SAMN04488557_1140 | SAMN04488557_3449 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | Hypothetical protein; Manually curated. | 0.742 |
SFV28979.1 | SFV38165.1 | SAMN04488557_1140 | SAMN04488557_3568 | Peptidylprolyl isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | ATP-dependent RNA helicase DeaD; Belongs to the DEAD box helicase family. | 0.929 |
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