STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV38946.1LTXXQ motif family protein. (214 aa)    
Predicted Functional Partners:
xseB
Exodeoxyribonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family.
  
 0.913
SFV27132.1
Hypothetical protein.
  
     0.738
SFV39105.1
Outer membrane immunogenic protein.
  
     0.719
SFV27618.1
Outer membrane immunogenic protein.
  
     0.715
SFV38098.1
Outer membrane protein beta-barrel domain-containing protein.
  
     0.674
SFV39107.1
Acetyltransferase, GNAT family.
  
 
   0.652
SFV29558.1
Hypothetical protein.
  
     0.564
SFV26195.1
Hypothetical protein.
  
     0.537
SFV38625.1
L,D-transpeptidase catalytic domain.
  
     0.533
SFV28005.1
Peptidoglycan/xylan/chitin deacetylase, PgdA/CDA1 family.
  
     0.524
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.