STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFV39022.1PilZ domain-containing protein. (209 aa)    
Predicted Functional Partners:
SFV39023.1
Predicted transglutaminase-like cysteine proteinase.
 
     0.851
SFV39021.1
Hypothetical protein.
 
     0.825
SFV26373.1
Pilus formation protein N terminal region.
  
     0.774
SFV26379.1
Prepilin peptidase CpaA.
  
     0.771
SFV38619.1
O-antigen ligase.
  
     0.770
SFV26388.1
Pilus assembly protein CpaE.
  
     0.767
SFV26398.1
Flp pilus assembly protein TadD, contains TPR repeats.
  
     0.767
SFV38566.1
Hpt domain-containing protein.
  
     0.766
SFV26386.1
Pilus assembly protein CpaD.
  
     0.765
SFV35437.1
Twin-arg-translocated uncharacterized repeat-containing protein.
  
     0.764
Your Current Organism:
Hyphomicrobium facile
NCBI taxonomy Id: 51670
Other names: ATCC 27485, H. facile, Hyphomicrobium facilis, IFAM H-526
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.