STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lolDABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner. (238 aa)    
Predicted Functional Partners:
Cpar_1776
PFAM: protein of unknown function DUF214; KEGG: cte:CT0258 putative ABC transporter, integral membrane protein.
 
 0.944
Cpar_1529
PFAM: protein of unknown function DUF214; KEGG: cte:CT1602 lipoprotein releasing system.
 
 0.940
lolD-2
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
  
  
 
0.908
Cpar_0806
PFAM: protein of unknown function DUF214; KEGG: cte:CT1350 ABC transporter efflux protein.
 
 0.904
Cpar_0995
PFAM: protein of unknown function DUF214; KEGG: cte:CT1103 conserved hypothetical protein.
  
 0.892
Cpar_0996
PFAM: protein of unknown function DUF214; KEGG: cte:CT1102 probable ABC transporter permease protein.
  
 0.892
Cpar_0805
PFAM: protein of unknown function DUF214; KEGG: cte:CT1351 ABC transporter efflux protein.
 
 0.877
Cpar_0452
KEGG: cte:CT0456 hypothetical protein.
       0.623
tsaD
Metalloendopeptidase, glycoprotease family; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.533
Cpar_0450
PFAM: low molecular weight phosphotyrosine protein phosphatase; KEGG: cph:Cpha266_0465 protein tyrosine phosphatase.
       0.529
Your Current Organism:
Chlorobaculum parvum
NCBI taxonomy Id: 517417
Other names: C. parvum NCIB 8327, Chlorobaculum parvum NCIB 8327, Chlorobaculum parvum str. NCIB 8327, Chlorobaculum parvum strain NCIB 8327
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