STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctha_0078KEGG: scl:sce6765 hypothetical protein. (848 aa)    
Predicted Functional Partners:
Ctha_2628
PFAM: peptidase S9B dipeptidylpeptidase IV domain protein; WD40 domain protein beta Propeller; KEGG: chu:CHU_3233 conserved hypothetical protein with multiple WD40-like repeats.
 
  
 0.753
Ctha_2258
KEGG: sru:SRU_1396 hypothetical protein.
  
     0.747
Ctha_0782
Hypothetical protein; KEGG: gfo:GFO_2891 conserved hypothetical protein, secreted.
  
     0.741
Ctha_2165
KEGG: sru:SRU_1207 hypothetical protein.
  
     0.737
Ctha_1053
KEGG: chu:CHU_1567 hypothetical protein.
  
     0.704
Ctha_0639
KEGG: sru:SRU_1812 hypothetical protein.
 
   
 0.695
Ctha_1867
Hypothetical protein; KEGG: sus:Acid_0899 peptidase M56, BlaR1.
  
     0.690
Ctha_0506
SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: sru:SRU_1533 hypothetical protein.
  
     0.688
Ctha_0030
KEGG: pdi:BDI_3738 hypothetical protein.
  
     0.676
Ctha_2050
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sru:SRU_0168 putative outer membrane protein probably involved in nutrient binding.
  
 
   0.672
Your Current Organism:
Chloroherpeton thalassium
NCBI taxonomy Id: 517418
Other names: C. thalassium ATCC 35110, Chloroherpeton thalassium ATCC 35110, Chloroherpeton thalassium str. ATCC 35110, Chloroherpeton thalassium strain ATCC 35110
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.