STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctha_1039ABC transporter-related protein; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cte:CT1901 ABC transporter, ATP-binding protein. (250 aa)    
Predicted Functional Partners:
Ctha_1712
PFAM: permease YjgP/YjgQ family protein; KEGG: plt:Plut_0389 hypothetical protein.
 
 
 0.994
Ctha_0621
PFAM: permease YjgP/YjgQ family protein; KEGG: cph:Cpha266_0940 permease YjgP/YjgQ family protein.
 
 
 0.991
Ctha_1795
PFAM: protein of unknown function DUF1239; KEGG: plt:Plut_1768 hypothetical protein.
  
 
 0.976
Ctha_1313
PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0862 ABC-2 type transporter.
   
  0.891
Ctha_0792
KEGG: cph:Cpha266_2554 hypothetical protein.
  
  
 0.873
Ctha_0776
acyl-(acyl-carrier-protein)--UDP-N- acetylglucosamine O-acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
  
 0.775
Ctha_1312
PFAM: ABC-2 type transporter; KEGG: pvi:Cvib_0863 ABC-2 type transporter.
   
  0.736
Ctha_1602
lipid-A-disaccharide synthase; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
 
   
 0.709
lpxD
UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase; Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3- hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. Belongs to the transferase hexapeptide repeat family. LpxD subfamily.
 
  
 0.704
Ctha_0093
KEGG: cph:Cpha266_0401 KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); Belongs to the SIS family. GutQ/KpsF subfamily.
 
  
 0.637
Your Current Organism:
Chloroherpeton thalassium
NCBI taxonomy Id: 517418
Other names: C. thalassium ATCC 35110, Chloroherpeton thalassium ATCC 35110, Chloroherpeton thalassium str. ATCC 35110, Chloroherpeton thalassium strain ATCC 35110
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