STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ctha_2154PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: fps:FP1278 probable aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (375 aa)    
Predicted Functional Partners:
Ctha_2155
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dsy:DSY3347 hypothetical protein.
 
  
 0.938
Ctha_2153
PFAM: transferase hexapeptide repeat containing protein; KEGG: mbu:Mbur_1588 transferase hexapeptide repeat.
 
     0.911
Ctha_0364
KEGG: rrs:RoseRS_3578 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
 
  
 0.857
Ctha_2149
PFAM: sugar transferase; KEGG: cbh:CLC_2559 putative undecaprenyl-phosphate galactosephosphotransferase.
  
 0.710
Ctha_1789
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: msi:Msm_1309 dTDP-D-glucose 4,6-dehydratase, RfbB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.671
Ctha_2150
PFAM: formyl transferase domain protein; KEGG: cbb:CLD_1851 bifunctional polymyxin resistance protein ArnA.
  
  
 0.606
Ctha_0793
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: ppd:Ppro_2450 UDP-N-acetylglucosamine 2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.588
Ctha_2146
PFAM: oxidoreductase domain protein; Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: pdi:BDI_1580 putative zinc-binding dehydrogenase.
  
  
 0.584
Ctha_0525
PFAM: transferase hexapeptide repeat containing protein; Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: gme:Gmet_3178 phosphoglucomutase/phosphomannomutase family protein.
  
  
 0.569
Ctha_2151
PFAM: LmbE family protein; KEGG: rrs:RoseRS_3646 LmbE family protein.
 
     0.512
Your Current Organism:
Chloroherpeton thalassium
NCBI taxonomy Id: 517418
Other names: C. thalassium ATCC 35110, Chloroherpeton thalassium ATCC 35110, Chloroherpeton thalassium str. ATCC 35110, Chloroherpeton thalassium strain ATCC 35110
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