STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC34721.1Phosphocarrier protein. (92 aa)    
Predicted Functional Partners:
SFC34685.1
PTS system, mannose-specific IIA component.
 
 
 0.998
SFC93710.1
Phosphotransferase system, enzyme I, PtsP; Belongs to the PEP-utilizing enzyme family.
  
 
 0.989
SFC34637.1
Hpr(Ser) kinase/phosphatase.
 
 
 
 0.940
SFC34660.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
  
 0.898
SFD00477.1
Transcriptional regulator, LacI family.
 
 
 
 0.883
SFD15139.1
Transcriptional regulator, LacI family.
 
 
 
 0.883
SFC22701.1
PTS IIA-like nitrogen-regulatory protein PtsN.
 
 
 0.882
SFC68429.1
Transcriptional regulator, LacI family.
   
 
 0.867
SFC97444.1
DNA-binding transcriptional regulator, LacI/PurR family.
   
 
 0.867
rpsG
SSU ribosomal protein S7P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family.
  
    0.838
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.