STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC36636.1Hypothetical protein. (149 aa)    
Predicted Functional Partners:
SFC63092.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.629
SFC79847.1
Hemoglobin/transferrin/lactoferrin receptor protein.
  
     0.592
SFC91285.1
Sulfotransferase family protein.
  
     0.569
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
       0.563
SFC99316.1
Hypothetical protein.
  
     0.559
SFC81844.1
Methyltransferase domain-containing protein.
  
     0.545
SFC86231.1
Hypothetical protein.
  
     0.541
SFC27098.1
Hypothetical protein.
  
     0.487
SFC36571.1
Hypothetical protein.
       0.460
rplY
LSU ribosomal protein L25P; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.430
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.