STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC43598.1Uncharacterized conserved protein YeaO, DUF488 family; Manually curated. (125 aa)    
Predicted Functional Partners:
SFC43640.1
Hemoglobin; Manually curated.
 
     0.821
SFC43373.1
Uncharacterized membrane protein.
 
     0.648
SFC43476.1
Cytochrome c oxidase cbb3-type subunit 4.
       0.598
SFC43445.1
Cytochrome c oxidase cbb3-type subunit 3; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
       0.595
SFC43512.1
Cytochrome c oxidase cbb3-type subunit 2.
       0.590
SFC43534.1
Cytochrome c oxidase cbb3-type subunit 1; Belongs to the heme-copper respiratory oxidase family.
       0.590
SFC43406.1
Hypothetical protein.
       0.586
SFC43562.1
Cytochrome oxidase maturation protein, cbb3-type.
       0.586
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.