STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC60944.1phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein. (148 aa)    
Predicted Functional Partners:
SFC86044.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
 
 0.999
SFC86068.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 
 0.998
SFC31596.1
Phospholipid transport system substrate-binding protein.
 
 0.992
SFC23844.1
Anti-sigma B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
  0.970
SFC70592.1
Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor).
  
  0.970
SFC60970.1
Hypothetical protein.
       0.864
SFC31572.1
Phospholipid-binding lipoprotein MlaA.
 
   
 0.824
SFC60916.1
NADH:ubiquinone oxidoreductase subunit.
     
 0.806
SFC39798.1
Chemotaxis protein MotB.
   
   0.750
SFD14409.1
Chemotaxis protein MotB.
   
   0.750
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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