STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC61543.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
SFC48541.1
Hypothetical protein.
  
     0.740
SFC35946.1
Hypothetical protein.
  
     0.730
SFC97101.1
SseB protein N-terminal domain-containing protein.
  
     0.725
SFC78144.1
Protein RodZ, contains Xre-like HTH and DUF4115 domains.
  
     0.718
SFC61573.1
Uncharacterized conserved protein, UPF0335 family; Belongs to the UPF0335 family.
       0.717
SFC49696.1
Rhomboid family protein.
  
     0.712
SFC52442.1
Putative peptidoglycan binding domain-containing protein.
  
     0.709
SFC72068.1
Hypothetical protein.
  
     0.691
SFC58456.1
Hypothetical protein.
  
     0.678
SFC62356.1
Phasin protein.
  
     0.674
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.