STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62106.1Nitroreductase. (240 aa)    
Predicted Functional Partners:
SFC85545.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.710
SFC93096.1
uroporphyrin-III C-methyltransferase / precorrin-2 dehydrogenase / sirohydrochlorin ferrochelatase.
    
 0.710
SFC62006.1
Long-chain acyl-CoA synthetase.
   
   0.633
SFC62039.1
Acyl-CoA dehydrogenase.
 
     0.586
SFC62072.1
Acyl-CoA dehydrogenase.
 
     0.580
SFC48278.1
ABC-2 type transport system permease protein.
  
  
 0.555
SFC54486.1
ABC-2 type transport system permease protein.
  
  
 0.555
SFC42924.1
2-hydroxychromene-2-carboxylate isomerase.
  
     0.550
SFC42891.1
Hypothetical protein.
 
  
  0.534
SFD15738.1
fatty-acyl-CoA synthase.
  
 
   0.484
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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