STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC62356.1Phasin protein. (147 aa)    
Predicted Functional Partners:
SFC62409.1
Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.882
SFC62290.1
Poly(3-hydroxybutyrate) depolymerase.
 
   
 0.879
SFC52442.1
Putative peptidoglycan binding domain-containing protein.
  
     0.768
SFC70215.1
Hypothetical protein.
  
     0.767
SFC36096.1
Hypothetical protein.
  
     0.766
SFC80963.1
Predicted Peptidoglycan domain-containing protein.
  
     0.756
SFC48541.1
Hypothetical protein.
  
     0.753
SFC45676.1
Hypoxia induced protein conserved region.
  
     0.752
SFC62321.1
Polyhydroxyalkanoate synthase.
 
   
 0.732
SFC84962.1
Protein of unknown function.
  
     0.732
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.