STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC65241.1Phage tail tape measure protein, lambda family. (220 aa)    
Predicted Functional Partners:
SFC65186.1
Phage tail tube protein, GTA-gp10.
 
    0.973
SFC65162.1
Phage major tail protein, TP901-1 family.
 
     0.968
SFC65141.1
Protein of unknown function.
 
    0.961
SFC65064.1
Phage conserved hypothetical protein, phiE125 gp8 family.
 
     0.958
SFC65089.1
Head-tail adaptor.
 
     0.958
SFC65333.1
Putative phage cell wall peptidase, NlpC/P60 family.
 
  
 0.936
SFC65214.1
Phage conserved hypothetical protein.
 
     0.935
SFC65267.1
TIGR02217 family protein.
 
    0.930
SFC65045.1
Phage major capsid protein, HK97 family.
 
    0.920
SFC65302.1
Phage conserved hypothetical protein BR0599.
 
     0.916
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.