STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC78251.1Hypothetical protein. (285 aa)    
Predicted Functional Partners:
metAA
Homoserine O-succinyltransferase; Transfers an acetyl group from acetyl-CoA to L-homoserine, forming acetyl-L-homoserine; Belongs to the MetA family.
 
     0.802
SFD03998.1
ATPase family associated with various cellular activities (AAA).
   
 0.798
SFC44161.1
Cu-processing system ATP-binding protein.
   
 0.746
SFC48252.1
ABC-2 type transport system ATP-binding protein.
   
 0.746
SFC54458.1
ABC-2 type transport system ATP-binding protein.
   
 0.746
SFC89573.1
Amino acid/amide ABC transporter ATP-binding protein 1, HAAT family.
   
 0.746
SFC90464.1
Peptide/nickel transport system ATP-binding protein.
   
 0.746
SFC64768.1
ATP-binding cassette, subfamily B.
    
 0.729
SFC71137.1
Protease I.
  
  0.705
SFC78223.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.700
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.