STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFC89408.1Glycine betaine/proline transport system substrate-binding protein. (306 aa)    
Predicted Functional Partners:
SFC89370.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.999
SFC89389.1
Glycine betaine/proline transport system permease protein.
 
 0.994
SFC53962.1
Glycine betaine/proline transport system ATP-binding protein.
 
 0.993
SFC53931.1
Glycine betaine/proline transport system permease protein.
 
 0.959
SFC89427.1
Transcriptional regulator, TetR family.
 
     0.927
SFC53901.1
Glycine betaine/proline transport system substrate-binding protein.
     
  0.885
SFC89465.1
Choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate.
 
   
 0.695
SFC45798.1
Methylase of chemotaxis methyl-accepting proteins.
    
  0.682
SFC89445.1
Betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid.
 
     0.643
SFC86044.1
phospholipid/cholesterol/gamma-HCH transport system permease protein.
     
 0.464
Your Current Organism:
Pseudooceanicola nitratireducens
NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210
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