SFC99664.1 protein (Pseudooceanicola nitratireducens)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SFC99664.1

Ferredoxin-NADP reductase. (226 aa)

Predicted Functional Partners:

SFD22710.1

0.740

SFC18753.1

0.519

SFC18816.1

0.499

SFC18720.1

0.477

SFC18902.1

0.474

SFC18781.1

0.470

SFC27098.1

0.459

SFC95307.1

0.453

SFC47243.1

0.451

SFC18658.1

0.440

Your Current Organism:

Pseudooceanicola nitratireducens

NCBI taxonomy Id: 517719
Other names: CGMCC 1.7292, DSM 29619, LMG 24663, LMG:24663, Oceanicola nitratireducens, Oceanicola nitratireducens Zheng et al. 2010, Oceanicola sp. JLT1210, P. nitratireducens, Pseudooceanicola nitratireducens (Zheng et al. 2010) Lai et al. 2015, strain JLT1210

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SFC18658.1	SFC18720.1	SAMN05421762_0111	SAMN05421762_0113	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	0.977
SFC18658.1	SFC18753.1	SAMN05421762_0111	SAMN05421762_0114	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	0.979
SFC18658.1	SFC18781.1	SAMN05421762_0111	SAMN05421762_0115	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.	0.963
SFC18658.1	SFC18816.1	SAMN05421762_0111	SAMN05421762_0116	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.	0.977
SFC18658.1	SFC18902.1	SAMN05421762_0111	SAMN05421762_0119	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	acyl-CoA thioesterase.	0.897
SFC18658.1	SFC99664.1	SAMN05421762_0111	SAMN05421762_3088	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	Ferredoxin-NADP reductase.	0.440
SFC18658.1	SFD22710.1	SAMN05421762_0111	SAMN05421762_3669	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	Sulfite reductase (NADPH) flavoprotein alpha-component.	0.709
SFC18720.1	SFC18658.1	SAMN05421762_0113	SAMN05421762_0111	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	0.977
SFC18720.1	SFC18753.1	SAMN05421762_0113	SAMN05421762_0114	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	0.999
SFC18720.1	SFC18781.1	SAMN05421762_0113	SAMN05421762_0115	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.	0.998
SFC18720.1	SFC18816.1	SAMN05421762_0113	SAMN05421762_0116	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.	0.998
SFC18720.1	SFC18902.1	SAMN05421762_0113	SAMN05421762_0119	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	acyl-CoA thioesterase.	0.984
SFC18720.1	SFC99664.1	SAMN05421762_0113	SAMN05421762_3088	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	Ferredoxin-NADP reductase.	0.477
SFC18753.1	SFC18658.1	SAMN05421762_0114	SAMN05421762_0111	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase.	0.979
SFC18753.1	SFC18720.1	SAMN05421762_0114	SAMN05421762_0113	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.	0.999
SFC18753.1	SFC18781.1	SAMN05421762_0114	SAMN05421762_0115	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.	0.999
SFC18753.1	SFC18816.1	SAMN05421762_0114	SAMN05421762_0116	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaA.	0.999
SFC18753.1	SFC18902.1	SAMN05421762_0114	SAMN05421762_0119	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	acyl-CoA thioesterase.	0.987
SFC18753.1	SFC99664.1	SAMN05421762_0114	SAMN05421762_3088	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	Ferredoxin-NADP reductase.	0.519
SFC18753.1	SFD22710.1	SAMN05421762_0114	SAMN05421762_3669	ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.	Sulfite reductase (NADPH) flavoprotein alpha-component.	0.549

page 1 of 3

Server load: low (20%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2023

Credits

Access

Info

About