Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFC23094.1 | SFC56883.1 | SAMN05421762_0245 | SAMN05421762_1372 | Glutamate synthase (NADPH) large subunit. | Biotin-requiring enzyme. | 0.921 |
SFC23094.1 | SFC65737.1 | SAMN05421762_0245 | SAMN05421762_1687 | Glutamate synthase (NADPH) large subunit. | Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.939 |
SFC23094.1 | SFC65768.1 | SAMN05421762_0245 | SAMN05421762_1688 | Glutamate synthase (NADPH) large subunit. | Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.910 |
SFC23094.1 | SFC67699.1 | SAMN05421762_0245 | SAMN05421762_1762 | Glutamate synthase (NADPH) large subunit. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.701 |
SFC23094.1 | SFD01482.1 | SAMN05421762_0245 | SAMN05421762_3170 | Glutamate synthase (NADPH) large subunit. | Citrate synthase. | 0.942 |
SFC23094.1 | SFD01502.1 | SAMN05421762_0245 | SAMN05421762_3171 | Glutamate synthase (NADPH) large subunit. | NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.765 |
SFC23094.1 | mdh | SAMN05421762_0245 | SAMN05421762_0729 | Glutamate synthase (NADPH) large subunit. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.943 |
SFC23094.1 | sucC | SAMN05421762_0245 | SAMN05421762_0727 | Glutamate synthase (NADPH) large subunit. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.939 |
SFC38067.1 | SFC56883.1 | SAMN05421762_0740 | SAMN05421762_1372 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Biotin-requiring enzyme. | 0.813 |
SFC38067.1 | SFC65737.1 | SAMN05421762_0740 | SAMN05421762_1687 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2. | 0.981 |
SFC38067.1 | SFC65768.1 | SAMN05421762_0740 | SAMN05421762_1688 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Pyruvate dehydrogenase E2 component (dihydrolipoamide acetyltransferase); The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). | 0.833 |
SFC38067.1 | SFC67699.1 | SAMN05421762_0740 | SAMN05421762_1762 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.895 |
SFC38067.1 | SFD01482.1 | SAMN05421762_0740 | SAMN05421762_3170 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Citrate synthase. | 0.933 |
SFC38067.1 | mdh | SAMN05421762_0740 | SAMN05421762_0729 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.917 |
SFC38067.1 | sucC | SAMN05421762_0740 | SAMN05421762_0727 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.987 |
SFC42799.1 | SFC56883.1 | SAMN05421762_0877 | SAMN05421762_1372 | 2-methylcitrate dehydratase PrpD. | Biotin-requiring enzyme. | 0.649 |
SFC42799.1 | SFC67699.1 | SAMN05421762_0877 | SAMN05421762_1762 | 2-methylcitrate dehydratase PrpD. | Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. | 0.633 |
SFC42799.1 | SFD01482.1 | SAMN05421762_0877 | SAMN05421762_3170 | 2-methylcitrate dehydratase PrpD. | Citrate synthase. | 0.934 |
SFC42799.1 | sucC | SAMN05421762_0877 | SAMN05421762_0727 | 2-methylcitrate dehydratase PrpD. | succinyl-CoA synthetase (ADP-forming) beta subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit. | 0.586 |
SFC56883.1 | SFC23094.1 | SAMN05421762_1372 | SAMN05421762_0245 | Biotin-requiring enzyme. | Glutamate synthase (NADPH) large subunit. | 0.921 |
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