STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC91334.1MJ0042 family finger-like domain protein; Psort location: Cytoplasmic, score: 8.87. (131 aa)    
Predicted Functional Partners:
rpiB
KEGG: cpe:CPE2198 1.1e-36 ribose 5-phosphate isomerase K01808; Psort location: Cytoplasmic, score: 8.87.
       0.597
EEC91333.1
Glu/Leu/Phe/Val dehydrogenase, dimerization domain protein; KEGG: lsl:LSL_1297 8.3e-160 gdhA; NADP-specific glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.98; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
       0.542
EEC89028.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.424
EEC89008.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.412
EEC89159.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.403
EEC91332.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.401
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.