STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbCdTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family. (190 aa)    
Predicted Functional Partners:
rfbD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 0.999
rfbB
KEGG: ljo:LJ1049 4.7e-134 dTDP-D-glucose 4,6-dehydratase K01710; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
 
 0.999
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis. Belongs to the glucose-1-phosphate thymidylyltransferase family.
 
 0.995
EEC89442.1
NAD dependent epimerase/dehydratase family protein; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
 
 
 0.987
gmhB
D,D-heptose 1,7-bisphosphate phosphatase; KEGG: cac:CAC3056 4.3e-37 nucleoside-diphosphate-sugar pyrophosphorylase K00966; Psort location: Cytoplasmic, score: 8.87.
  
 0.965
EEC91279.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 4.6e-88 glycosyltransferase K00754.
 
 
 0.948
EEC91269.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.918
EEC91277.1
KEGG: ldb:Ldb0450 4.7e-29 tarB; putative CDP-glycerol:glycerophosphate glycerophosphotransferase K01005.
  
  
 0.858
EEC90350.1
Polysaccharide biosynthesis protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.853
EEC91311.1
Hypothetical protein; KEGG: cvi:CV3901 1.0e-05 galU; UTP-glucose-1-phosphate uridylyltransferase K00963; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.842
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.