STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC91285.1KEGG: tte:TTE0762 1.5e-41 gmhA; Phosphoheptose isomerase K03271; Psort location: Cytoplasmic, score: 9.98. (218 aa)    
Predicted Functional Partners:
gmhB
D,D-heptose 1,7-bisphosphate phosphatase; KEGG: cac:CAC3056 4.3e-37 nucleoside-diphosphate-sugar pyrophosphorylase K00966; Psort location: Cytoplasmic, score: 8.87.
 
 0.999
EEC91287.1
GHMP kinase, N-terminal domain protein; KEGG: pen:PSEEN2467 2.7e-74 kinase; galactokinase/homoserine kinase family K00924.
 
 0.991
EEC91288.1
Glycosyltransferase, group 1 family protein; KEGG: azo:azo3270 5.1e-14 glycosyltransferase; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.884
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
   
 
 0.866
EEC91283.1
Glycosyltransferase, group 2 family protein; KEGG: aci:ACIAD0074 2.2e-31 putative glycosyl transferase family 2; Psort location: Cytoplasmic, score: 8.87.
   
 
 0.812
EEC91284.1
Glycosyltransferase, group 2 family protein; KEGG: afu:AF0322 2.1e-11 rfbQ; rhamnosyl transferase K00754.
       0.786
EEC91289.1
Hypothetical protein; KEGG: bcz:BCZK4973 1.8e-07 wciJ; glycosyl transferase, group 1; possible capsular polysaccharide biosynthesis protein K00754; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.763
EEC91279.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 4.6e-88 glycosyltransferase K00754.
  
 
 0.753
EEC91277.1
KEGG: ldb:Ldb0450 4.7e-29 tarB; putative CDP-glycerol:glycerophosphate glycerophosphotransferase K01005.
  
 
 0.686
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
 
 0.676
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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