STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC91301.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (57 aa)    
Predicted Functional Partners:
EEC91302.1
LD-carboxypeptidase; KEGG: cpr:CPR_2453 2.5e-10 MccF-like protein K01297.
  
    0.751
EEC90841.1
Acetyltransferase, GNAT family; KEGG: fnu:FN2046 0.0021 acetyltransferase K00680.
  
 
 0.487
EEC90025.1
Transcriptional regulator, AraC family; KEGG: bca:BCE_3772 1.5e-16 adaA; Ada regulatory protein/6-O-methylguanine-DNA methyltransferase K00567; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.487
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.465
EEC89902.1
Chorismate mutase; KEGG: vfi:VF0561 3.4e-44 chorismate mutase K04093:K04518; Psort location: Cytoplasmic, score: 9.98.
    
  0.460
eno
Phosphopyruvate hydratase; Catalyzes the reversible conversion of 2-phosphoglycerate into phosphoenolpyruvate. It is essential for the degradation of carbohydrates via glycolysis; Belongs to the enolase family.
  
 
  0.447
EEC90275.1
Putative dipeptidase; KEGG: lin:lin1661 6.2e-84 similar to Xaa-His dipeptidase K01439.
  
 
  0.440
EEC89893.1
Putative dipeptidase; KEGG: ctc:CTC01945 1.3e-65 succinyl-diaminopimelate desuccinylase K01270; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.440
EEC90177.1
Beta-eliminating lyase; KEGG: sha:SH1592 7.0e-76 hypothetical protein K01620; Psort location: Cytoplasmic, score: 8.87.
  
 
  0.438
EEC90843.1
Acetyltransferase, GNAT family; KEGG: mth:MTH999 3.3e-07 N-terminal acetyltransferase complex, subunit ARD1 K03789; Psort location: Cytoplasmic, score: 8.87.
    
 0.434
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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