STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC91071.1Transcriptional regulator, Crp/Fnr family; Psort location: Cytoplasmic, score: 8.87. (215 aa)    
Predicted Functional Partners:
EEC90945.1
MIP family channel protein; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
 
 0.923
EEC90055.1
Class II glutamine amidotransferase; KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; Psort location: Cytoplasmic, score: 8.87.
    
 0.919
EEC91078.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: vfi:VF0494 1.4e-47 sensory transduction protein kinase; Psort location: Cytoplasmic, score: 9.98.
  
 0.911
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.87.
    
 0.890
EEC90067.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: eci:UTI89_C1612 2.5e-10 ydaM; hypothetical protein YdaM.
   
 0.846
EEC89932.1
Diguanylate cyclase (GGDEF) domain protein; KEGG: ava:Ava_1777 5.8e-28 metal dependent phosphohydrolase, HD region with response regulator receiver modulation K07814; Psort location: CytoplasmicMembrane, score: 7.63.
   
 0.819
EEC90946.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.809
EEC89965.1
Pyridine nucleotide-disulfide oxidoreductase; KEGG: cte:CT0282 8.4e-74 glutamate synthase (NADPH) small chain K00266; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.806
EEC88991.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.806
EEC91140.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.802
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.