STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90967.1Pseudouridylate synthase; KEGG: lin:lin2436 6.9e-53 similar to 16S pseudouridylate synthase K06183; Belongs to the pseudouridine synthase RsuA family. (227 aa)    
Predicted Functional Partners:
EEC90966.1
NOL1/NOP2/sun family protein; KEGG: spa:M6_Spy0946 8.0e-75 putative 23S rRNA m(5)C methyltransferase K00599.
     
 0.819
EEC90965.1
Amino acid kinase family; KEGG: ssp:SSP1357 4.5e-81 aspartokinase II K00928; Belongs to the aspartokinase family.
       0.783
xth
Exodeoxyribonuclease III; KEGG: lsa:LSA1338 9.1e-83 exoA; exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.98.
  
    0.778
xth-2
KEGG: fnu:FN0047 3.2e-71 exodeoxyribonuclease III K01142; Psort location: Cytoplasmic, score: 9.98.
  
    0.778
EEC89876.1
HAD hydrolase, family IA, variant 3; KEGG: eci:UTI89_C3052 1.0e-12 yqaB; putative phosphatase K01091; Psort location: Cytoplasmic, score: 8.87.
      0.776
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.762
cmk
Cytidylate kinase; KEGG: ljo:LJ1089 1.0e-42 cytidylate kinase K00945; Psort location: Cytoplasmic, score: 8.87.
 
  
 0.718
scpB
Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
  
 0.640
EEC90963.1
Amidohydrolase family protein; KEGG: btl:BALH_0450 1.0e-51 hutI; imidazolonepropionase K01468; Psort location: Cytoplasmic, score: 8.87.
       0.625
EEC90964.1
Amidohydrolase family protein; KEGG: btl:BALH_0450 3.5e-65 hutI; imidazolonepropionase K01468; Psort location: Cytoplasmic, score: 8.87.
       0.625
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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