STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90844.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (46 aa)    
Predicted Functional Partners:
EEC90847.1
Methyltransferase domain protein; KEGG: mbo:Mb0533 9.4e-09 possible methyltransferase/methylase (fragment) K00599.
       0.553
EEC90845.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.551
EEC90846.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.551
EEC90848.1
BAAT/acyl-CoA thioester hydrolase C-terminal domain protein; KEGG: bld:BLi01024 8.4e-10 hypothetical protein K01068; Psort location: Cytoplasmic, score: 8.87.
       0.551
EEC90849.1
O-methyltransferase domain protein; KEGG: fnu:FN0388 5.4e-37 tetracenomycin polyketide synthesis O-methyltransferase TcmP K00599; Psort location: Cytoplasmic, score: 8.87.
       0.551
EEC90850.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
       0.551
uvrA
Excinuclease ABC, A subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate.
    
  0.432
EEC89267.1
ABC transporter, ATP-binding protein; KEGG: reh:H16_A0400 3.3e-69 uvrA1; excinuclease ABC, ATPase subunit (A) K01529; Psort location: CytoplasmicMembrane, score: 9.49.
    
  0.432
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.