STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90875.1Putative septation ring formation regulator EzrA; KEGG: fnu:FN0522 2.0e-07 exonuclease SBCC K03546; Psort location: Cytoplasmic, score: 8.87. (608 aa)    
Predicted Functional Partners:
EEC91242.1
Putative cell division protein FtsA; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.915
EEC90739.1
DivIVA domain protein; KEGG: lwe:lwe2040 0.00013 cell division protein DivIVA K01549; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.904
thiI
Thiamine biosynthesis/tRNA modification protein ThiI; Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS.
       0.805
EEC90874.1
Aminotransferase, class V; KEGG: bce:BC4648 4.3e-76 cysteine desulfhydrase K04487; Psort location: Cytoplasmic, score: 8.87.
       0.805
EEC91377.1
Hypothetical protein.
  
   
 0.781
EEC91149.1
Hypothetical protein; KEGG: bsu:BG10464 9.6e-13 prsA; pric/parvulin family of rotamase K07533.
  
     0.774
EEC91041.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.773
EEC91148.1
Hypothetical protein; KEGG: lla:L164604 7.8e-13 pmpA; maturation protein K07533.
  
     0.772
EEC90457.1
Replication initiation and membrane attachment protein, DnaB/DnaD family; KEGG: spz:M5005_Spy_0285 8.3e-06 dnaB; replicative DNA helicase K03346; Psort location: Cytoplasmic, score: 8.87.
 
     0.767
EEC89615.1
YbbR-like protein.
  
     0.759
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.