STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90817.1Hypothetical protein; Psort location: Extracellular, score: 8.82. (40 aa)    
Predicted Functional Partners:
EEC90815.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: spd:SPD_1445 1.3e-51 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.559
EEC90816.1
Response regulator receiver domain protein; KEGG: ava:Ava_1878 1.2e-27 two component transcriptional regulator, winged helix family K07659; Psort location: Cytoplasmic, score: 9.98.
       0.559
EEC90818.1
Ser/Thr phosphatase family protein; KEGG: hpa:HPAG1_0403 2.5e-17 integral membrane protein.
       0.469
EEC90813.1
Efflux ABC transporter, permease protein; Psort location: CytoplasmicMembrane, score: 9.97.
       0.419
EEC90814.1
Putative bacteriocin export ABC transporter, lactococcin 972 group; KEGG: lwe:lwe2133 2.9e-63 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49.
       0.419
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.