STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90668.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (349 aa)    
Predicted Functional Partners:
EEC90667.1
Hypothetical protein; KEGG: vfi:VFB02 1.1e-05 traC; DNA primase TraC; Psort location: Cytoplasmic, score: 8.87.
     0.893
EEC90686.1
NlpC/P60 family protein; KEGG: bat:BAS5084 2.2e-18 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; Psort location: Extracellular, score: 9.55.
 
     0.790
EEC90684.1
Hypothetical protein; KEGG: mpe:MYPE6470 6.6e-05 parC; DNA topoisomerase IV subunit A K02621.
 
     0.785
EEC90593.1
KEGG: btl:BALH_3229 0.0011 sigW; RNA polymerase sigma-70 factor, ECF subfamily K00960; Psort location: Cytoplasmic, score: 8.87.
  
     0.771
EEC90594.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.762
EEC90659.1
Hypothetical protein; Catalyzes the reductive methylation of 2'-deoxyuridine-5'- monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant.
  
     0.755
EEC90592.1
Putative phage head-tail adaptor; KEGG: mpe:MYPE6470 7.2e-05 parC; DNA topoisomerase IV subunit A K02621; Psort location: Cellwall, score: 10.00.
  
     0.749
EEC90661.1
DNA-binding helix-turn-helix protein.
  
     0.723
EEC90669.1
Topoisomerase DNA-binding C4 zinc finger domain protein; KEGG: efa:EF2312 9.9e-44 topB-2; DNA topoisomerase III K03169; Psort location: Cytoplasmic, score: 8.87.
       0.686
EEC90656.1
Bacterial mobilization protein MobC; Psort location: Cytoplasmic, score: 8.87.
  
     0.680
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.