STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90681.1Hypothetical protein. (127 aa)    
Predicted Functional Partners:
EEC90682.1
Resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.910
EEC90671.1
Virulence-associated protein E; Psort location: Cytoplasmic, score: 8.87.
 
     0.776
EEC90683.1
DNA topoisomerase; KEGG: efa:EF2312 2.7e-113 topB-2; DNA topoisomerase III K03169; Psort location: Cytoplasmic, score: 8.87.
       0.773
EEC90672.1
CHC2 zinc finger domain protein; KEGG: dde:Dde_2053 3.0e-12 DNA primase K02316; Psort location: Cytoplasmic, score: 8.87.
 
     0.754
EEC90693.1
CHC2 zinc finger domain protein; KEGG: she:Shewmr4_2907 0.00044 DNA primase K02316; Psort location: Cytoplasmic, score: 8.87.
 
     0.629
EEC90680.1
Hypothetical protein.
       0.588
EEC90679.1
Hypothetical protein.
       0.587
EEC89246.1
Hypothetical protein.
 
     0.583
EEC90692.1
Resolvase, N-terminal domain protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.581
EEC90684.1
Hypothetical protein; KEGG: mpe:MYPE6470 6.6e-05 parC; DNA topoisomerase IV subunit A K02621.
       0.570
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.