STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90690.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (290 aa)    
Predicted Functional Partners:
EEC90686.1
NlpC/P60 family protein; KEGG: bat:BAS5084 2.2e-18 N-acetylmuramoyl-L-alanine amidase, C-terminus K01446; Psort location: Extracellular, score: 9.55.
     0.897
EEC90688.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
   
 0.876
EEC90724.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
    0.792
EEC90719.1
Hypothetical protein.
 
     0.787
EEC90720.1
TraG family protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.787
EEC90684.1
Hypothetical protein; KEGG: mpe:MYPE6470 6.6e-05 parC; DNA topoisomerase IV subunit A K02621.
 
     0.785
EEC90723.1
Hypothetical protein.
 
     0.784
EEC90573.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
   
 0.763
EEC90566.1
TraG/TraD family protein.
 
     0.746
repA
Replication initiator protein A domain protein; KEGG: pfa:PFI0455w 0.0015 exoribonuclease, putative K01146.
 
     0.742
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.