STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90598.1Hypothetical protein; Psort location: Cytoplasmic, score: 8.87. (217 aa)    
Predicted Functional Partners:
EEC90597.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
 
     0.899
EEC90596.1
DNA-binding helix-turn-helix protein; KEGG: reh:H16_A1411 0.0096 shikimate kinase containing a XRE-type HTH DNA-binding domain K00924; Psort location: Cytoplasmic, score: 8.87.
 
     0.688
EEC90588.1
ParB-like protein; KEGG: pub:SAR11_0354 8.4e-06 parB; chromosome partitioning protein K03497; Psort location: Cytoplasmic, score: 8.87; Belongs to the ParB family.
  
     0.559
EEC90592.1
Putative phage head-tail adaptor; KEGG: mpe:MYPE6470 7.2e-05 parC; DNA topoisomerase IV subunit A K02621; Psort location: Cellwall, score: 10.00.
  
     0.508
EEC90852.1
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.487
EEC90486.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
     0.464
EEC90694.1
MobA/MobL family protein; KEGG: ret:RHE_PA00159 9.9e-29 traAa; conjugal transfer protein A K01144; Psort location: Cytoplasmic, score: 8.87.
  
     0.441
EEC89020.1
Toxin-antitoxin system, antitoxin component, HicB family; Psort location: Cytoplasmic, score: 8.87.
  
     0.429
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.