STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90601.1DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 8.87. (237 aa)    
Predicted Functional Partners:
EEC90913.1
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
    
 0.825
nifJ
KEGG: ctc:CTC01741 0. pyruvate-flavodoxin oxidoreductase K03737; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.813
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
    
 0.801
EEC89543.1
DNA-binding helix-turn-helix protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
     0.752
EEC90102.1
HipA-like C-terminal domain protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.668
EEC89082.1
Response regulator receiver domain protein; KEGG: ava:Ava_2028 3.7e-38 two component transcriptional regulator, LuxR family; Psort location: Cytoplasmic, score: 9.98.
   
 0.614
EEC90307.1
Hypothetical protein; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.555
EEC90602.1
KEGG: fal:FRAAL1877 1.8e-31 putative ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
     
 0.492
EEC90603.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.26.
       0.445
murB
UDP-N-acetylmuramate dehydrogenase; Cell wall formation.
    
 0.440
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.