STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90534.1KEGG: ava:Ava_4630 5.5e-12 HAD-superfamily hydrolase subfamily IA, variant 3 K01838; Psort location: Cytoplasmic, score: 8.87. (208 aa)    
Predicted Functional Partners:
guaA
GMP synthase (glutamine-hydrolyzing) domain protein; Catalyzes the synthesis of GMP from XMP.
 
 
 0.846
EEC90913.1
Competence/damage-inducible domain protein CinA; Belongs to the CinA family.
    
  0.811
EEC88938.1
KEGG: ypn:YPN_3715 6.4e-153 PTS system, mannitol-specific IIABC component K02798:K02799:K02800; Psort location: CytoplasmicMembrane, score: 10.00.
  
 
  0.808
ribD
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
    
  0.800
EEC89525.1
PRD domain protein; KEGG: spb:M28_Spy1064 2.0e-19 PTS system, mannitol (cryptic)-specific IIA component K00890; Psort location: Cytoplasmic, score: 8.87.
    
  0.799
EEC91063.1
PRD domain protein; KEGG: spj:MGAS2096_Spy1084 1.6e-16 transcription antiterminator, BglG family / PTS system, mannitol (cryptic)-specific IIA component K00890; Psort location: Cytoplasmic, score: 8.87.
    
  0.798
EEC91013.1
HAD hydrolase, family IA, variant 3; KEGG: vfi:VFA0937 1.7e-19 phosphoglycolate phosphatase K01091; Psort location: Cytoplasmic, score: 8.87.
  
     0.761
EEC90535.1
Putative permease; KEGG: bcz:BCZK0244 0.00026 guanine-hypoxanthine permease; xanthine/uracil permease family protein K06901; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.522
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
  
 0.514
EEC90012.1
KEGG: ban:BA5658 3.3e-14 hydrolase, haloacid dehalogenase-like family K01560; Psort location: Cytoplasmic, score: 8.87.
  
 0.488
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.