STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90493.1Hypothetical protein; KEGG: fnu:FN1094 9.7e-18 dolichol-phosphate mannosyltransferase K00721; Psort location: Cytoplasmic, score: 8.87. (166 aa)    
Predicted Functional Partners:
gmhB
D,D-heptose 1,7-bisphosphate phosphatase; KEGG: cac:CAC3056 4.3e-37 nucleoside-diphosphate-sugar pyrophosphorylase K00966; Psort location: Cytoplasmic, score: 8.87.
  
 0.892
EEC89576.1
GtrA-like protein; Psort location: CytoplasmicMembrane, score: 9.75.
  
 
 0.537
EEC90336.1
NAD dependent epimerase/dehydratase family protein; KEGG: bcz:BCZK3072 9.0e-13 galE; UDP-glucose 4-epimerase K01784.
  
 
 0.526
EEC91279.1
Glycosyltransferase, group 2 family protein; KEGG: gbe:GbCGDNIH1_2152 4.6e-88 glycosyltransferase K00754.
  
 
 0.518
rfbB
KEGG: ljo:LJ1049 4.7e-134 dTDP-D-glucose 4,6-dehydratase K01710; Psort location: Cytoplasmic, score: 8.87; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
 
 0.501
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
 0.501
EEC90990.1
Putative aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit; KEGG: fnu:FN0754 1.9e-89 glutamyl-tRNA(Gln) amidotransferase subunit A K02433; Psort location: Cytoplasmic, score: 8.87; Belongs to the amidase family.
  
 0.495
EEC89272.1
Polysaccharide deacetylase; KEGG: ctc:CTC00537 1.0e-35 peptidoglycan N-acetylglucosamine deacetylase K01463; Psort location: Cytoplasmic, score: 9.65.
  
 
 0.495
mprF
Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms.
  
 
 0.474
EEC89661.1
PAP2 family protein; KEGG: bce:BC2260 3.8e-13 phosphatidylglycerophosphatase B K01094; Psort location: CytoplasmicMembrane, score: 9.99.
    
 0.464
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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