STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90497.1KEGG: lwe:lwe1990 4.1e-32 ABC transporter, ATP-binding protein K06020; Psort location: CytoplasmicMembrane, score: 9.49. (298 aa)    
Predicted Functional Partners:
atpA-2
ATP synthase F1, alpha subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit.
   
 
 0.930
EEC89866.1
ABC transporter, ATP-binding protein; KEGG: rru:Rru_A2804 1.1e-38 ABC transporter component K06020; Psort location: CytoplasmicMembrane, score: 9.49.
  
0.929
EEC90496.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
  
 0.925
EEC90421.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: reh:H16_A3653 1.6e-30 ABC-type transporter, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
   
 0.862
EEC89789.1
ABC transporter, ATP-binding protein; KEGG: hpa:HPAG1_0365 1.0e-22 multidrug resistance protein K01509; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.840
EEC89871.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 1.0e-24 comA; competence factor transporting ATP-binding/permease protein ComA; Psort location: CytoplasmicMembrane, score: 9.99.
 
 0.802
EEC90494.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 9.8e-28 comA; competence factor transporting ATP-binding/permease protein ComA; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
0.786
EEC89920.1
ABC transporter, ATP-binding protein; KEGG: ava:Ava_4147 2.0e-18 ABC transporter-like K06021; Psort location: CytoplasmicMembrane, score: 9.49.
 
 0.779
EEC90495.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
       0.773
EEC88969.1
ABC transporter, ATP-binding protein; KEGG: spd:SPD_0049 4.2e-40 comA; competence factor transporting ATP-binding/permease protein ComA; Psort location: CytoplasmicMembrane, score: 10.00.
 
 0.754
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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