STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecfA-2ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. (294 aa)    
Predicted Functional Partners:
EEC90513.1
Cobalt transport protein; Psort location: CytoplasmicMembrane, score: 9.99.
 0.999
ecfA
ABC transporter, ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.975
EEC90357.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
   
 0.965
EEC89570.1
KEGG: fal:FRAAL1681 8.1e-43 putative ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
 
  
 
0.939
EEC90058.1
Hypothetical protein.
   
 
 0.925
EEC89474.1
KEGG: cch:Cag_1883 4.1e-87 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like K02031; Psort location: CytoplasmicMembrane, score: 9.82.
 
     
0.900
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
  
  
 0.895
EEC91224.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 
 0.851
EEC91106.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99.
 
 
 
 0.850
EEC90511.1
KEGG: cpf:CPF_1229 1.7e-33 histidinol phosphate phosphatase family protein K04486; Psort location: Cytoplasmic, score: 8.87; Belongs to the PHP hydrolase family. HisK subfamily.
       0.795
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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