STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90423.1Receptor family ligand-binding protein. (390 aa)    
Predicted Functional Partners:
EEC90421.1
Branched-chain amino acid ABC transporter, permease protein; KEGG: reh:H16_A3653 1.6e-30 ABC-type transporter, ATPase and permease components; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
EEC90422.1
KEGG: fal:FRAAL2623 7.7e-23 hypothetical protein; putative membrane protein involved in branched-chain amino acid transport, ATP-binding; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
EEC90420.1
ABC transporter, ATP-binding protein; KEGG: pen:PSEEN1283 4.1e-64 livG; branched-chain amino acid ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.997
EEC90419.1
ABC transporter, ATP-binding protein; KEGG: bur:Bcep18194_A5826 1.5e-64 ABC branched-chain amino acid family transporter, ATPase subunit K01996; Psort location: CytoplasmicMembrane, score: 9.49.
 
 
 0.994
EEC90051.1
ANTAR domain protein.
  
 
 0.944
EEC90418.1
CBS domain protein; KEGG: bsu:BG11600 3.1e-11 yhcV; similar to IMP dehydrogenase K00088; Psort location: Cytoplasmic, score: 8.87.
 
     0.772
groL
Chaperonin GroL; Prevents misfolding and promotes the refolding and proper assembly of unfolded polypeptides generated under stress conditions.
     
 0.549
EEC90055.1
Class II glutamine amidotransferase; KEGG: gka:GK1431 0. glutamate synthaselarge subunit K00265; Psort location: Cytoplasmic, score: 8.87.
     
 0.543
EEC88933.1
KEGG: tde:TDE2216 3.3e-181 mglA; galactoside ABC transporter, ATP-binding protein K02056; Psort location: CytoplasmicMembrane, score: 9.49.
    
 0.543
rpmE
Ribosomal protein L31; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily.
  
    0.520
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.