STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90303.1Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.99. (245 aa)    
Predicted Functional Partners:
EEC90304.1
Cell envelope-like function transcriptional attenuator common domain protein; Psort location: Cytoplasmic, score: 8.87.
      0.848
EEC90302.1
Cell envelope-like function transcriptional attenuator common domain protein; KEGG: pfa:PF13_0044 0.00025 carbamoyl phosphate synthetase, putative K01955:K01956.
      
0.762
EEC90305.1
Polysaccharide biosynthesis protein; KEGG: lsl:LSL_0995 1.2e-103 UDP-N-acetylglucosamine 4,6-dehydratase / UDP-D-quinovosamine 4-dehydrogenase K00100:K01726; Psort location: CytoplasmicMembrane, score: 9.97.
     
 0.588
EEC90301.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.75.
       0.499
EEC90295.1
Chain length determinant protein; KEGG: rha:RHA1_ro05453 9.8e-15 probable protein-tyrosine kinase K08252; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.468
EEC90296.1
PHP domain protein; KEGG: cno:NT01CX_1524 1.6e-30 CpsB protein K01104; Psort location: Cytoplasmic, score: 8.87.
  
  
 0.468
EEC90297.1
Capsular exopolysaccharide family; KEGG: mkm:Mkms_0964 4.5e-33 lipopolysaccharide biosynthesis K08252; Psort location: CytoplasmicMembrane, score: 9.82.
  
  
 0.465
EEC90300.1
Cell envelope-like function transcriptional attenuator common domain protein; Psort location: CytoplasmicMembrane, score: 9.26.
      
0.460
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.