STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EEC90129.1ROK family protein; KEGG: cac:CAC2613 2.5e-96 glcK; transcriptional regulators of NagC/XylR family K00845; Psort location: Cytoplasmic, score: 9.98. (310 aa)    
Predicted Functional Partners:
EEC90065.1
Phosphotransferase system, EIIB; KEGG: lpl:lp_3513 3.7e-77 pts30BCA; beta-glucosides PTS, EIIBCA K02755:K02756:K02757; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.994
EEC89042.1
Phosphotransferase system, EIIC; KEGG: bbu:BBB29 1.2e-135 malX; PTS system, maltose and glucose-specific IIBC component K02790:K02791; Psort location: CytoplasmicMembrane, score: 10.00.
  
 0.994
pgi
KEGG: bca:BCE_5037 3.3e-124 pgi; phosphoglucose isomerase K01810; Psort location: Cytoplasmic, score: 9.98; Belongs to the GPI family.
 
 
 0.959
EEC90961.1
KEGG: aha:AHA_2345 4.8e-22 glucose-6-phosphate isomerase K01810; Psort location: Cytoplasmic, score: 8.87.
    
 0.927
pgcA
Phosphoglucomutase; KEGG: bld:BLi00997 1.4e-143 yhxB; similar to phosphomannomutase; RBL02883 K01840; Psort location: Cytoplasmic, score: 8.87.
 
 
 0.912
EEC89408.1
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.893
fba
KEGG: cpf:CPF_1557 2.1e-106 fba; fructose-1,6-bisphosphate aldolase, class II K01624; Psort location: Cytoplasmic, score: 8.87.
    
 0.886
EEC90063.1
Glycosyl hydrolase, family 1; KEGG: cac:CAC1405 4.3e-163 bglA; beta-glucosidase K01188; Psort location: Cytoplasmic, score: 9.98; Belongs to the glycosyl hydrolase 1 family.
  
 
 0.880
lacG
6-phospho-beta-galactosidase; KEGG: spg:SpyM3_1653 7.7e-157 lacG; putative 6-phospho-beta-galactosidase K01220; Psort location: Cytoplasmic, score: 9.98.
  
 
 0.880
aglB
6-phospho-alpha-glucosidase; KEGG: cpe:CPE0199 2.6e-163 malH; maltose-6'-phosphate glucosidase K01232; Psort location: Cytoplasmic, score: 8.87.
  
 
 0.875
Your Current Organism:
Holdemanella biformis
NCBI taxonomy Id: 518637
Other names: Eubacterium biforme DSM 3989, H. biformis DSM 3989, Holdemanella biformis DSM 3989
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.